species:   Fugra
pid:       PID0979
parent:    FgmilR-7dps-62
paralog:   
locus:     NC_026476.1:6033575-6033664
matures:   ['UGAUCAGACUGACCAUGACGCCU', 'GUUCAGGCUUGGUGUGUCAAG']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026476.1:6033575-6033664

0 out of bounds
7 alignments
7 proper strand
7 stranded perfect matches

      *************************                             ***********************       
GCAGGGGUUGAUCAGACUGACCAUGACGCCUUGUAGACGAUUGCUGACCUUGCAUAUGCUGGGUUCAGGCUUGGUGUGUCAAGCUACCGC
....((.((((.((.(((((((.(((.((((.(((......(((.......)))..))).))))))))).))))).)))))).)).....
--------UGAUCAGACUGACCAUGACGCCU----------------------------------------------------------- l=23 a=5 c
--------------------------------------------------------------GUUCAGGCUUGGUGUGUCAAG------- l=21 a=0 c*
--------UGAUCAGACUGACCAUGACGCCU----------------------------------------------------------- l=23 a=5 ma
--------------------------------------------------------------GUUCAGGCUUGGUGUGUCAAG------- l=21 a=0 ma*

-------------------------------UGUAGACGAUUGCUGACCUUGCAUA---------------------------------- l=25 a=1 
--------UGAUCAGACUGACCAUGACGCCU----------------------------------------------------------- l=23 a=5 (c,ma)
-------UUGAUCAGACUGACCAUGACGCCU----------------------------------------------------------- l=24 a=1 

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-111
